#!/usr/bin/env python3 from sklearn.cluster import KMeans import numpy as np import glob import os import pandas as pd import argparse DIR: str = os.path.dirname(os.path.realpath(__file__)) OUT_DIR: str = DIR + '/clustering' IN_DIR: str = DIR + '/feature_vectors' RAND_SEED: int = 0 def cluster_kmeans(path: str, n_clusters: int, save_to_disk: bool = True) -> tuple[any, any]: clazz_name = os.path.basename(path) clazz_name = clazz_name[:clazz_name.rfind('.')] df = pd.read_csv(path, index_col=0) X = df.to_numpy() kmeans = KMeans(n_clusters=n_clusters, random_state=RAND_SEED, n_init='auto').fit(X) Y = kmeans.labels_ # array of cluster # assigned to each method # combine cluster labels with method name assigned = pd.DataFrame(Y, columns=['cluster']).set_axis( df.index.values) if save_to_disk: assigned.to_csv(OUT_DIR + '/' + clazz_name + '_kmeans.csv') return (X, Y,) def main(): parser = argparse.ArgumentParser( description='Compute k-means clustering') parser.add_argument('class_name', type=str, help='name of the god class') parser.add_argument('n_clusters', type=int, help='number of clusters') args = parser.parse_args() path = IN_DIR + '/' + args.class_name + '.csv' os.remove(OUT_DIR + '/' + args.class_name + '_kmeans.csv') cluster_kmeans(path, args.n_clusters) if __name__ == '__main__': main()