50 lines
1.4 KiB
Python
Executable File
50 lines
1.4 KiB
Python
Executable File
#!/usr/bin/env python3
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from sklearn.cluster import AgglomerativeClustering
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import numpy as np
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import glob
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import os
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import pandas as pd
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import argparse
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DIR: str = os.path.dirname(os.path.realpath(__file__))
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OUT_DIR: str = DIR + '/clustering'
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IN_DIR: str = DIR + '/feature_vectors'
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def cluster_hierarchical(path: str, n_clusters: int, save_to_disk: bool = True) -> tuple[any, any]:
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clazz_name = os.path.basename(path)
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clazz_name = clazz_name[:clazz_name.rfind('.')]
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df = pd.read_csv(path)
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X = df.drop(df.columns[0], axis=1).to_numpy()
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kmeans = AgglomerativeClustering(
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n_clusters=n_clusters, linkage='complete').fit(X)
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Y = kmeans.labels_ # array of cluster # assigned to each method
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# combine cluster labels with method name
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assigned = pd.DataFrame(Y, columns=['cluster']).set_axis(
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df.iloc[:, 0].values)
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if save_to_disk:
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assigned.to_csv(OUT_DIR + '/' + clazz_name + '_hierarchical.csv')
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return (X, Y,)
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def main():
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parser = argparse.ArgumentParser(
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description='Compute agglomerative clustering')
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parser.add_argument('class_name', type=str, help='name of the god class')
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parser.add_argument('n_clusters', type=int, help='number of clusters')
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args = parser.parse_args()
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path = IN_DIR + '/' + args.class_name + '.csv'
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os.remove(OUT_DIR + '/' + args.class_name + '_hierarchical.csv')
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cluster_hierarchical(path, args.n_clusters)
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if __name__ == '__main__':
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main()
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