report 70% done

report.tex

@@ -148,10 +148,15 @@ assertions) simply run:
 env MAVEN_OPTS="-ea" mvn clean test
 \end{verbatim}
 
-The state of the assignment repository when the type checker was first ran
+Apache Commons Text includes classes that have been deprecated. As changing the
-successfully is pinned by the \textit{git} tag \textit{before-refactor}. A copy
+interface and behaviour of these classes would be useless, as alternatives to
-of the CheckerFramework relevant portion of the compilation output at that tag
+them exist in the library already, I choose to ignore them while refactoring by
-is stored in the file \textit{before-refactor.txt}.
+adding a \textit{@SuppressWarning} annotation in each of them. The state of the
+assignment repository after the deprecated classes are annotated and when the
+type checker was first ran successfully is pinned by the \textit{git} tag
+\textit{before-refactor}. A copy of the CheckerFramework relevant portion of the
+compilation output at that tag is stored in the file
+\textit{before-refactor.txt}.
 
 No CheckerFramework checkers other than the index checker is used in this 
 analysis as the code in the project mainly manipulates strings and arrays and a
@@ -175,7 +180,7 @@ significant number of warnings are generated even by using this checker only..
         Total & 513 & 483 \\ \bottomrule
     \end{tabular}
     \caption{Number of CheckerFramework Type Checker warnings by category before
-    and after refactoring.}
+    and after refactoring, ignoring deprecated classes.}
     \label{tab:check}
 \end{table}
 
@@ -187,8 +192,8 @@ in the following classes:
 
 \begin{multicols}{2}
 \begin{itemize}
-\item AlphabetConverter
+\item AlphabetConverter % done
-\item StringSubstitutor
+\item StringSubstitutor % done
 \item similarity.LongestCommonSubsequence
 \item translate.AggregateTranslator
 \item translate.CharSequenceTranslator
@@ -204,20 +209,147 @@ in the following classes:
 \end{itemize}
 \end{multicols}
 
+The strategy I adopt to perform the refactoring is based on the compiler errors
+thrown on the original code. In every flagged statement I attempt to find the
+root cause of the warning and eliminate it with either extended type qualifier
+annotations or assertions when adding only the former fails. 
 
+Instead of using \texttt{@SuppressWarning} annotations I choose to use
+\texttt{@AssumeAssertion}-annotated assertions as I aim to use the existing
+Commons Text test suite to aid in finding incorrectly-placed annotations. As
+mentioned before in the report, I run the test suite of the project by enabling
+assertions and I verify that all tests still pass and no
+\textit{AssertionError}s are thrown.
 
+In total, the refactor consists in the placement of 16 extended type qualifiers 
+and 14 assertions. A more detailed description of salient refactoring decisions
+taken to extinguish the warnings follows.
 
-\begin{listing}[H]
+\subsection{Class \textit{AlphabetConverter}}
-\begin{minted}[linenos,firstnumber=139]{java}
+
-public static int toMillisInt(final Duration duration) {
+\begin{minted}[linenos,firstnumber=387]{java}
-    Objects.requireNonNull(duration, "duration");
+for (int j = 0; j < encoded.length();) {
-    // intValue() does not do a narrowing conversion here
+    final int i = encoded.codePointAt(j);
-    return LONG_TO_INT_RANGE.fit(Long.valueOf(duration.toMillis())).intValue();
+    final String s = codePointToString(i);
+
+    if (s.equals(originalToEncoded.get(i))) {
+        result.append(s);
+        j++; // because we do not encode in Unicode extended the
+             // length of each encoded char is 1
+    } else {
+        if (j + encodedLetterLength > encoded.length()) {
+            throw new UnsupportedEncodingException("Unexpected end "
+                    + "of string while decoding " + encoded);
+        }
+        final String nextGroup = encoded.substring(j,
+                j + encodedLetterLength);
+\end{minted}
+
+Here the \texttt{substring(\ldots)} call at line 151 is flagged by
+CheckerFramework warning the start and end index may be negative and that the
+start index may be greater than the end index. As the attribute
+\texttt{encodedLetterLength} is positive according to the contract of the class
+constructor and \texttt{j} is only incremented in the for loop or by a factor of
+\texttt{encodedLetterLength}, the code is correct. After introducing a
+\mintinline{java}{@Positive} annotation on the declaration of \texttt{j} and an
+\mintinline{java}{assert encodedLength > 0} after line 395, CheckerFramework
+agrees with my judgement.
+
+\subsection{Class \textit{StringSubstitutor}}
+
+\begin{minted}[linenos,breaklines,firstnumber=910]{java}
+/** [...]
+ * @throws IllegalArgumentException if variable is not found when its allowed to throw exception
+ * @throws StringIndexOutOfBoundsException if {@code offset} is not in the
+ *  range {@code 0 <= offset <= source.length()}
+ * @throws StringIndexOutOfBoundsException if {@code length < 0}
+ * @throws StringIndexOutOfBoundsException if {@code offset + length > source.length()}
+ */
+public String replace(final String source, final int offset, final int length) {
+    if (source == null) {
+        return null;
+    }
+    final TextStringBuilder buf = new TextStringBuilder(length).append(source, offset, length);
+    if (!substitute(buf, 0, length)) {
+        return source.substring(offset, offset + length);
+    }
+    return buf.toString();
 }
 \end{minted}
-    \caption{Method \textit{toMillisInt(Duration)} of class
+
-    \textit{time.DurationUtils} in Apache Commons Lang 3.12.0.}
+The implementation of method \texttt{replace} is flagged by the extended type
-\end{listing}
+checker as the indices \texttt{offset} and \texttt{length} are not bound checked
+against the string \texttt{source}. As the unsafe behaviour of the method is
+documented in its \textit{javadoc} with appropriate \texttt{@throws} clauses, I
+simply add this implied preconditions to the method's contract by using extended
+type qualifiers:
+
+\begin{minted}[breaklines]{java}
+public String replace(final String source,
+                      final @IndexOrHigh("#1") int offset,
+                      final @NonNegative @LTLengthOf(value = "#1", offset = "#2 - 1") int length)
+\end{minted}
+
+\subsection{Class \textit{translate.CharSequenceTranslator} and implementors}
+
+Apache Commons Text provides the aforementioned abstract class implementation as
+a template method of sorts for expressing text encoding and decoding algorithms.
+The class essentially provides facilities to scan UTF-16 code points
+sequentially, and delegating the translation of each code point to the
+implementation of the abstract method:
+
+\begin{minted}[breaklines]{java}
+public abstract int translate(CharSequence input, int index, Writer writer) throws IOException;
+\end{minted}
+
+CheckerFramework gives some warnings about some of the implementations of this
+method, highlighting that they assume the \texttt{input} \textit{CharSequence}
+is non-empty and the \texttt{index} parameter is a valid index for the string. 
+
+Even if the method is public, I choose to interpret this hierarchy to mainly be
+a template method pattern, with high coupling between the algorithm in the
+abstract class and each abstract method implementation. Given this, I decide to
+restrict the method's precondition to highlight conditions already provided by
+the caller algorithm, namely the length and index constraints provided by
+CheckerFramework.
+
+The new signature of the abstract method is this:
+
+\begin{minted}[breaklines]{java}
+public abstract int translate(@MinLen(1) CharSequence input,
+                              @NonNegative @LTLengthOf("#1") int index,
+                              Writer writer) throws IOException;
+\end{minted}
+
+As some methods have a more forgiving implementation, and a broader child method 
+argument type from a more restrictive parent type does not break the rules of
+inheritance (thanks to contravariance), I choose to propagate the extended type
+annotations only when needed and avoid introducing additional preconditions to
+more tolerant implementations of the template method.
+
+\subsection{Class \textit{translate.SinglePassTranslator} and implementors}
+
+\textit{SinglePassTranslator} is one of the implementor classes of the
+aforementioned \textit{CharSequenceTranslator} template method. However, the
+class is itself a template method pattern ``for processing whole input in single
+pass''\footnote{According to the class \textit{javadoc} description.}, i.e.
+essentially performing an abstraction inversion of the codepoint-by-codepoint
+algorithm in \textit{CharSequenceTranslator} by implementing the encoding or
+decoding process in a single go.
+
+The class immediately delegates the implementation of the translation algorithm
+to the abstract package-private method:
+
+\begin{minted}[breaklines]{java}
+abstract void translateWhole(CharSequence input, Writer writer) throws IOException;
+\end{minted}
+
+and requires callers of the public implementation of \texttt{translate} to call
+it with \texttt{index} equal to 0.
+
+I simply propagate the non-empty extended type annotation on \texttt{input}
+(i.e. \mintinline{java}{@MinLen(1)}) on this new abstract method and
+implementors.
 
 \section{Conclusions}